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Scientific Software Engineer - Data Analysis & Algorithms at Gnothis AB
Valley Recruitment AB
Cell- och molekylärbiologer m.fl.

Gnothis AB is seeking for a skilled Software Engineer who enjoys building experimental systems in a laboratory environment. This is a permanent position based at our HQ, located at the campus of Stockholm University (Stockholm, Sweden). Gnothis, founded in 2015 and supported by highly innovative industrial professionals and technology developers, is on a mission to develop a new frontier for single molecule DNA sequencing; to break the mold on how sequencing is used as a clinical tool for the diagnosis of complex diseases. Gnothis technology integrates a wide range of cutting-edge sciences ranging from nanotechnology, photophysics, optics, surface chemistry, biochemistry and computational science. Our instrumentation, software and analysis team currently consists of four engineers and we are now expanding the team as we scale development of the system. We are seeking for an engineer with strong data analysis and scientific programming experience to develop our DNA sequencing data analysis pipeline. The role combines algorithm development, image analysis, and scientific data exploration, working closely with our instrumentation and biochemistry teams. The work involves analyzing experimental data from our microscopy-based sequencing platform and developing the automated analysis pipeline that converts raw microscopy data into DNA sequencing results. The position is part of a multidisciplinary team developing a prototype DNA sequencing instrument combining microscopy, microfluidics, nanofabrication and advanced data analysis. Initial Project The initial assignment will be to continuously analyze the latest experimental data from the lab in close collaboration with the biochemistry and instrument teams. This means developing new analysis algorithms, critically reviewing results together with the team, and driving experiment design to better address the research questions. The work includes analyzing fluorescence microscopy data, developing algorithms for tasks such as peak detection and classification, and translating manual analysis workflows into automated pipelines using Python and Airflow. We are seeking for the right candidate who can make confident decisions based on previous experiences connected to laboratory environments (eg. development of diagnostic software tools and/or processing of fluorescence microscopy raw data). Responsibilities Develop algorithms and analysis methods for microscopy-based sequencing data Implement automated analysis pipelines in Python and Airflow Perform exploratory analysis of experimental datasets and extract meaningful insights Collaborate closely with instrumentation and biochemistry teams to interpret results and improve experiments Develop tools for data visualization, evaluation and reporting Contribute to building a robust and scalable DNA sequencing analysis workflow. Candidate Profile For you to enjoy performing expected activities, and being a valuable member in an ambitious and innovative team; we think you are an engineer or scientist with strong experience in scientific programming and data analysis. This role suits someone who enjoys working deeply with experimental datasets and extracting insight through algorithm development, statistical analysis and careful data interpretation. The candidate should be comfortable working independently with complex datasets and driving the development of analysis methods in collaboration with a small multidisciplinary team. Relevant backgrounds and skills include: Master of Science and/or Ph.D educational background – ideally combined with a relevant Life Science focus. Python programming for scientific computing Image analysis and signal processing Microscopy or fluorescence imaging data Statistics and experimental data analysis Scientific visualization and reporting DNA sequencing or genomics data A PhD with strong experience in microscopy data, sequencing data, or similar experimental datasets is highly preferred. Gnothis offer a creative environment focused on technology and product development, a competitive compensation package and plenty of room for self-development as the company expands. This is a permanent position (not consultant assignment). If above sounds like an exciting opportunity and you would like to hear more, do not hesitate and submit your application and we will get back to you! Gnothis AB on LinkedIn: https://www.linkedin.com/company/gnothis/posts/?feedView=all For inquires please email us at: [email protected]

67 dagar sedan
Sista ansökan:
28 september 2026
Engineer R&D - Microfluidics & Instrumentation at Gnothis AB
Valley Recruitment AB
Cell- och molekylärbiologer m.fl.

Gnothis AB is seeking for a hands-on engineer who enjoys building experimental systems in a laboratory environment. The role combines microfluidics integration, instrument prototyping, and Python-based automation. This is a permanent position based at our HQ, located at the campus of Stockholm University (Stockholm, Sweden). Gnothis, founded in 2015 and supported by highly innovative industrial professionals and technology developers, is on a mission to develop a new frontier for single molecule DNA sequencing; to break the mold on how sequencing is used as a clinical tool for the diagnosis of complex diseases. Gnothis technology integrates a wide range of cutting-edge sciences ranging from nanotechnology, photophysics, optics, surface chemistry, biochemistry and computational science. Since we have taken significant steps forward and now need to solve the remaining crucial challenges before commercialization; for the right person this is a unique opportunity to become a valuable member, to use your “think-outside-the box” mentality with aim to develop a new world-class technology platform! Our instrumentation, software and analysis team currently consists of four engineers and we are now expanding the team as we scale development of the system. The work is primarily on-site and very practical, involving both hardware integration and control software development. The position is part of a multidisciplinary team developing a prototype DNA sequencing instrument combining microscopy, microfluidics, nanofabrication and advanced data analysis. Initial Project The first major task will be to design and integrate a microfluidics subsystem into our existing microscope prototype – to plan, test, order and add already commercially available components to a final prototype. This includes selecting and integrating a commercial microfluidics system (e.g. Elveflow or similar), designing a custom sample chip holder and fluid interface, integrating control into an existing Python control software, and establishing practical operation and cleaning procedures. The work is supported by a biochemistry team, but we are seeking for the right candidate who can make confident engineering decisions based on previous hands-on experiences connected to eg. microfluidics and laboratory automation. Responsibilities Mechanically integrate new devices into a prototype life-science instrument. The initial focus is on liquid sample handling, such as flow and temperature control. Develop Python control and automation software, starting from existing vendor SDKs. Design simple mechanical parts (CAD / 3D printing) Hands-on prototyping and debugging in the lab Method development for instrument performance evaluation and self-calibration. Over time the role will involve increasing focus on automation and device control software. Candidate Profile For you to enjoy performing expected activities, and being a valuable member in an ambitious and innovative team; we think you are an engineer with a strong creative mindset and with strong previous experience building/developing scientific or laboratory instrumentation. This role suits someone who enjoys experimental prototyping in a small startup environment. The candidate should be comfortable collaborating in a multidisciplinary research environment consisting of engineering, software, biochemistry and nanofabrication experts. Relevant backgrounds and skills include: Master of Science and/or Ph.D. educational background – ideally combined with a relevant Life Science focus. Practical experience with microfluidics systems Python programming for hardware control Comfortable with hands-on lab engineering (CAD, electronics, prototyping) Microscopy / Optics / Imaging Lab automation / Liquid handling Mechatronics / Robotics A recent Ph.D. with strong hands-on instrument development experience could also be a good fit for this position. Gnothis offer a creative environment focused on technology and product development, a competitive compensation package and plenty of room for self-development as the company expands. This is a permanent position (not consultant assignment). If above sounds like an exciting opportunity and you would like to hear more, do not hesitate and submit your application and we will get back to you! Gnothis AB on LinkedIn: https://www.linkedin.com/company/gnothis/posts/?feedView=all For inquires please email us at: [email protected]

67 dagar sedan
Sista ansökan:
28 september 2026
Scientist, Sequencing R&D at Single Technologies AB

We are seeking for an experienced biochemist to join our R&D team and help drive product development of our 3-D sequencing technologies. The successful candidate will play a key role in developing, implementing, and refining Single Technologies’ biochemical and molecular workflows, pushing the boundaries of DNA analysis with unprecedented throughput. This is a bench-focused role with significant responsibility for product-facing deliverables, including reagent formulation, workflow optimization, and performance characterization. You will work in a truly international and multidisciplinary team spanning molecular biology, chemistry, bioinformatics, and engineering, helping translate concepts into robust, manufacturable products. Within our slim organization, you will have the opportunity to influence technical direction across multiple stages of product development. This is a full-time, permanent position based at our Stockholm headquarters. Responsibilities Design, develop, and optimize biochemical workflows and reagents for 3-D sequencing. Integrate and optimize chemistries and enzymatic methods to improve sequencing performance, robustness, and reproducibility. Design, execute, analyse and report on experiments supporting research and product development. Collaborate cross-functionally with hardware, chemistry, and software teams to ensure workflow compatibility with Single Technologies’ sequencing platform. Analyze complex datasets and contribute to data interpretation and workflow optimization using coding and computational tools. Support product-oriented development efforts, including reagent stability, scalability, and manufacturability. Prepare detailed documentation and present findings to project teams. Skills & Requirements PhD in Biochemistry, Molecular Biology, Chemical Biology, or a related field, with 3+ years of hands-on experience in assay development. Strong background in nucleic acid and/or protein biochemistry. Industry experience in sequencing product development, including reagent formulation, workflow optimization, and validation. Proven ability to design experiments, analyze data, and troubleshoot complex biochemical systems. Proficiency in computational analysis of biological datasets using Python, R, or MATLAB. Excellent written and verbal communication skills, and ability to collaborate effectively in multidisciplinary teams. Experience with image-based molecular detection, NGS-based readouts, and/or multiomics workflows is a plus. We offer a creative environment focused on technology and product development. We also offer a competitive compensation-package and plenty of room for self-development as the company expands. If above sounds like an exciting opportunity and you would like to hear more, do not hesitate and submit your application and we will get back to you! For inquires, please reach out to: [email protected] About Single Technologies AB Single Technologies is a Stockholm-based deep tech company aiming to transform the data generation in sequencing completely through our patented 3-D Sequencing™, a truly disruptive technology. Single was founded in 2014 as a unique combination of research from the Royal Institute of Technology and R&D in the fiber optical grating industry. A strong multidisciplinary team is pushing the limits of what the industry assumes is possible when it comes to sequencing and Big Data generation. Read more at: https://www.singletechnologies.com/

107 dagar sedan
Sista ansökan:
19 augusti 2026